Thursday, April 8, 2021

Gene Mapping, Two Point and Three Point Test Crosses, Coincidence and Interference

 Gene mapping

Genes are arranged linearly in a chromosome. The point in a chromosome where the gene is located is called locus. The diagrammatic representation of location and arrangement of genes and relative distance between linked genes of a chromosome is called linkage map or genetic map.

Constructing Genetic Maps

When two genes are close together on the same chromosome, they do not assort independently and are said to be linked.  Genes located on different chromosomes are not linked and they assort independently and have a recombination frequency of 50%.  Linked genes have a recombination frequency less than 50%.

The number of genetic recombinants produced is characteristic of the two linked genes involved. Genetic experiments can be used in genetic mapping.

Unlinked genes assort independently. The best cross to use to test for linkage is the testcross, a cross of an individual with another individual homozygous recessive for all genes involved. In a testcross between a+ /a b+ /b and a/a b/b, where genes a and b are unlinked, progeny phenotypic ratio will be 1:1:1:1. A significant deviation from this ratio (more parental types and few recombinant types) indicates that the two genes do not assort independently and that they  are linked. The chi-square test can be used to find the significant deviation.

In an individual that is doubly heterozygous for the w and m alleles, for example, the alleles can be arranged in two ways:


In the arrangement on the left, the two wild-type alleles are on one homolog and the two recessive mutant alleles are on the other homolog, an arrangement called coupling (or the cis configuration). Crossing-over between the two loci produces w+m and wm+ recombinants.

In the arrangement on the right, each homolog carries the wild-type allele of one gene and the mutant allele of the other gene, an arrangement called repulsion (or the trans configuration).  Crossing-over between the two genes produces w+m+ and wm recombinants.

The recombination frequency for two linked genes is the same, regardless of whether the alleles of the two genes involved are in coupling or in repulsion. Although the actual phenotypes of the recombinant classes are different for the two arrangements, the percentage of recombinants among the total progeny will be the same in each case.

In 1913, a student of Morgan’s, Alfred Sturtevant, determined that recombination frequencies could be used as a quantitative measure of the genetic distance between two genes on a genetic map. The genetic distance between genes is measured in map units (mu),where 1 map unit is defined as the interval in which 1 percent crossing-over takes place. The map unit is also called a centimorgan (cM), a term named by Sturtevant in honor of Morgan.

The unit of genetic map is Morgan or centimorgan. When the percentage of crossing over between two linked genes is 1 per cent, then the map distance between the linked genes is one morgan.

There is a greater probability of occurrence of crossing over, when the two genes are farther apart in a chromatid. The probability of crossing over between two genes is directly proportional to the distance between them.

When two genes are nearer, the probability of occurrence of crossing over between them is limited.

Gene Mapping with Two-Point Testcrosses

Testcrosses are used for mapping because the homozygous recessive parent produces only one type of gamete, with alleles that are recessive to the alleles in gametes produced by the heterozygous parent. So in a testcross we use one parent that is heterozygous for the genes being mapped and another parent that has the recessive alleles for those genes.

A two-point testcross should yield a pair of parental types that occur with about equal frequency and a pair of recombinant types that also occur with about equal frequency.

The following formula is used to calculate the recombination frequency:

Number of recombinants                 X 100    = Recombination Frequency  = Map Units

Total number of testcross progeny

The recombination frequency is used directly as an estimate of map units.

The two-point method of mapping is most accurate when the two genes examined are close together; when genes are far apart, there are inaccuracies.

Gene Mapping with Three-Point Testcrosses

Genetic maps can be built by using a series of two-point testcrosses. Still more complex type of mapping analysis for three linked genes can be done using a three-point testcross. In diploid organisms, the three-point testcross is a cross of a triple heterozygote with a triply homozygous recessive.

Uses of gene mapping 

1.        It is useful to determine the location, arrangement and linkage of genes in a chromosome.

 2.        It is useful to predict the results of dihybrid and trihybrid crosses.

Interference and Coincidence:

Besides single crossing over, having only one chiasma, there may be double or multiple crossing over. It has been discovered by H.J.Muller (1911) that when there are two double cross-overs (suppose a and b) then one cross-over (a) tries to prevent the formation of other cross over (b). This tendency of one cross-over to interfere with the other cross over is termed as interference. Suppose frequency of ‘a’ crossover is 10 and frequency of ‘b’ cross-over is 12, then their total frequency will not be 10+12 = 22 as required but will be less than 22 due to interference.

When the two things happen the same time and at the same place, they then coincide or intermix and this occurrence may be considered coincidence. This coincidence refers to the occurrence of two or more distinct cross-over (double or multiple) at about the same time in the same chromosomal region. Double cross-overs are the result of coming together (coincidence) of two single cross-overs.

When doubles occur in regular expected ratio, coincidence is said to be 100%, whereas interference will be nil. i.e., coincidence is inversely proportional to the interference.

According to Muller (1916) the coefficient of coincidence is the ratio between the observed and expected frequencies of double cross overs. 

Coefficient of coincidence = Actual number of double cross-overs/Expected number of double cross-overs.

Interference = 1- Coefficient of Coincidence

 

 

 

Cell Cycle and Checkpoints

Cell Cycle

The cell cycle or cell-division cycle is the series of events by which a cell divide into two daughter cells. These events include duplication of DNA and organelles and partitioning into two daughter cells. 

Prokaryotic Cell Cycle

Cells, whether prokaryotic or eukaryotic, eventually reproduce or die.  For prokaryotes, the mechanism of reproduction is relatively simple, since there are no internal organelles. The cell cycle is divided into the B, C, and D periods. The B period starts from the end of cell division to the beginning of DNA replication.  This is the growth phase in which the mass of the cell is increased. DNA replication occurs during the C period. The D period starts from the end of DNA replication and is up to the splitting of the bacterial cell into two daughter cells. The length of the overall cell cycle is determined by the B period, as the C and D periods have relatively fixed time constraints.  The length of B is determined mainly by environmental conditions and the gain in cell mass.  Generation times for bacteria can vary from under half an hour to several days.

Eukaryotic Cell Cycle

In eukaryotic cells, the cell cycle is divided into two main stages: interphase and the mitotic (M) phase. During interphase, the cell grows and accumulates nutrients needed for mitosis, and replicates its DNA and some of its organelles. During the mitotic phase, the replicated chromosomes, organelles, and cytoplasm separate into two new daughter cells. To ensure the proper replication of cellular components, there are control mechanisms known as cell cycle checkpoints in the cell cycle.  These checkpoints determine if the cell can progress to the next phase. Checkpoints prevent cell cycle progression at specific points, allowing verification of necessary phase processes and repair of DNA damage. The cell cannot proceed to the next phase until checkpoint requirements are met. Checkpoints typically consist of a network of regulatory proteins that monitor and dictate the progression of the cell through the cell cycle.

Actively dividing eukaryote cells pass through a series of stages in the cell cycle: two gap phases (G1 and G2); an S (synthesis) phase, in which the genetic material is duplicated; and an M phase, in which mitosis partitions the genetic material and the cell divides.


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Immediately following mitosis, the newly created cells are in the G1 phase. This is largely a growth phase, during which there is a lot of biosynthesis of proteins, lipids, and carbohydrates.  There is no synthesis of new DNA at this time. G1 is the longest of the cell cycle phases in many cell types, and most of the physiological activity of a cell happens during G1.

Following G1, the next phase of the cell cycle is the S phase, during which synthesis of new DNA occurs. The genome is being replicated during this phase.  At the end of S phase, the cell has twice the normal amount of DNA.

After S phase, the cell proceeds into G2, which provides an opportunity for the cell to perform a self-assessment and make final preparations (such as more cell growth, repairing of DNA, etc) as necessary before it finally heads into mitosis.

Mitosis, or M phase, is primarily

(1) Breakdown of the nucleus

(2) Re-distribution of the DNA to opposite sides of the cell

(3) Formation of two new nuclei around that DNA, and

(4) Cytokinesis, the final splitting of the cell into two.

·                  G1 phase. Metabolic changes prepare the cell for division. At a certain point - the restriction point - the cell is committed to division and moves into the S phase.

·                  S phase. DNA synthesis replicates the genetic material. Each chromosome now consists of two sister chromatids.

·                  G2 phase. Metabolic changes assemble the cytoplasmic materials necessary for mitosis and cytokinesis.

·                  M phase. A nuclear division (mitosis) followed by a cell division (cytokinesis).

The period between mitotic divisions - that is, G1, S and G2 - is known as interphase.

As the cell progresses through the various phases of cell cycle, it is through a specific and controlled manner, with checkpoints.  These checkpoints “ask” if the cell is ready for the next step: is it large enough, is the DNA healthy- without any damage, etc. As a result, the cell ensures that it generate healthy daughter cells.  If the cell cycle runs too rapidly without the checkpoints, then there will not be enough time for the cell to enlarge, to make up enough cellular organelles, etc and that may lead to abnormally small daughter cells that fail to survive. Likewise, if a cell undergoes mitosis without identifying and repairing damaged or mutated DNA, then the daughter cells may turn into a cancerous cell. So it is very much necessary that the cell cycle is governed by the check points. 

Cell cycle check points ensure that

  • The nuclear genome is intact and is without any damage
  • The conditions are appropriate to divide, there are enough nutrients for the daughter cells
  • The genetic material is divided only once in a cell cycle and is completely replicated
  • No damages or mutations in the daughter chromosomes, if there are mutations, will be repaired by repair enzymes
  • Chromosomes are correctly aligned and oriented during metaphase and are correctly attached to spindle fibers

The cell cycle is controlled at three checkpoints. The integrity of the DNA is assessed at the G1 checkpoint. Proper chromosome duplication is assessed at the G2 checkpoint. Attachment of each kinetochore to a spindle fiber is assessed at the M checkpoint.  All the major checkpoint transitions in the cell cycle is signaled by cyclins and cyclin dependent kinases (CDKs). Cyclins are cell-signaling molecules that regulate the cell cycle.


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The G1 checkpoint

This is DNA damage checkpoint.  This first checkpoint regulates the transition from G1 to S phase.  The G1 phase is the state of a cell immediately following cytokinesis, and is usually very long.  The length of G1 is generally constant for a given cell type under normal conditions, but it vary greatly between different cell types.  Cell which will no longer divide, are in G1 until they die, and this continuous G1-like state is referred to as G0.  

The G1 checkpoint determines whether conditions are favorable for cell division to proceed. This checkpoint is also known as the restriction point in yeast.  During this point the cell irreversibly commits to cell division. The cell will pass this checkpoint only if it has an appropriate size and has favorable extracellular environment and the cell also checks for DNA damage. The extracellular environment includes nutrient availability or predatory threats and an external trigger such as a mitogenic hormone or paracrine signal. Nearly all normal animal cells require an extracellular signal to progress through the G1 checkpoint.

If a cell does not meet these requirements, it will not progress to S phase. The cell will be halted in the cycle and attempt to remedy the problematic conditions.

If a cell meets the requirements for G1 checkpoint, it will enter S phase and begin DNA replication.

The G2 checkpoint

This is DNA replication checkpoint. This second checkpoint regulates entry of the into mitosis.  This is triggered by MPF (Maturation Promoting Factor or M-phase Promoting Factor) which is a cyclin-Cdk complex. It promotes mitosis by phosphorylating a variety of other protein kinases.

Here also as with the G1 checkpoint, cell size and protein/ energy reserves are assessed.  The most important role of this checkpoint is to ensure that all of the chromosomes are accurately replicated without any mistake or damage.

If the checkpoint mechanisms detect problems with DNA, this checkpoint hold the cell in G2 a little longer, the cell cycle is halted and the cell attempts to either complete DNA replication or repair the damaged DNA.

If no problems are detected with DNA, cyclin dependent kinases (CDKs) signal the beginning of mitotic cell division.  Most of the metabolic activity of the cell is shut down, and cell concentrates its resources on dividing the nuclear and cellular materials. 

The M checkpoint

This is the third checkpoint and occurs during mitosis, near the end of the metaphase stage of mitosis.  This regulates the transition from metaphase into anaphase.  It ensures that ail the chromosomes are properly attached to the spindle at the metaphase plate before anaphase. After attachment of all kinetochores, the anaphase promoting complex (APC) is activated, triggering breakdown of cyclin and inactivation of proteins holding sister chromatids together, and they split apart and move to opposite poles.

The M checkpoint is also known as the spindle checkpoint because it determines whether all the sister chromatids are correctly attached to spindle microtubules. The cycle will not proceed until the kinetochores of each pair of sister chromatids are firmly anchored to at least two spindle fibers arising from opposite poles of the cell.  This is very important since the sister chromatids should be perfectly lined up at metaphase, split apart and moved to opposite poles to form the new daughter nuclei.  If they do not split evenly, the daughter cells will have abnormal numbers of chromosomes (aneuploidy) and it leads to deleterious consequences.  Thus M Checkpoint prevents cells from incorrectly sorting their chromosomes during division.

Importance of Cell cycle checkpoints

  • Checkpoints delay cell division until the problems are fixed and solved
  • Checkpoints prevent cell division if the problems cannot be solved
  • Induce apoptosis if the problems are severe and cannot be repaired
  • Accurately maintain the genome of the organism
  • Ensures that only one round of replication per cell cycle
  • If checkpoints are not working properly due to mutations, will lead to cancerous growth of the cell

Regulatory Molecules of the Cell Cycle

There are regulatory molecules which either promote progress of the cell to the next phase (positive regulation) or halt the cycle (negative regulation). Regulator molecules may act individually or they can influence the activity or production of other regulatory proteins.

Positive Regulation of the Cell Cycle

Two groups of proteins, called cyclins and cyclin-dependent kinases (Cdks), are responsible for the progress of the cell through the various checkpoints. The cyclins are proteins that regulate progression through the cell cycle. Cyclins regulate the cell cycle when they are bound to respective cdk.  To be fully active the cdk/cyclin complex must be phosphorylated, then they phosphorylate other proteins that functions in the cell cycle.

The levels of the four cyclin proteins, Cyclin D, E, A and B, fluctuate throughout the cell cycle. Increases in cyclin proteins are triggered by external and internal signals and once the cell moves to the next stage of the cell cycle, the cyclins that were active in the previous stage are degraded. There is a direct correlation between cyclin accumulation and the three major cell cycle checkpoints.

Although the cyclins are the main regulatory molecules that positively regulate cell cycle, there are several other mechanisms to fine tune the cycle. These mechanisms block the progression of the cell cycle until problem condition is solved. Molecules that prevent the activation of cdks are called cdk inhibitors which directly or indirectly monitor a particular cell cycle event. They block cdks until the specific event/error being monitored is completed/repaired.



Cell cycle stage

cyclins

cdks

comments

G1

Cyclin D

cdk 4 & 6

React to outside signals such as growth factors or mitogens

G1/S

Cyclins E

cdk 2

Regulate centrosome duplication

S

Cyclins A

cdk 2

Targets helicases and polymerases

M

Cyclins B

cdk 1

Regulate G2/M checkpoint

Negative Regulation of the Cell Cycle

The second group of cell cycle regulatory molecules are negative regulators. Negative regulators halt the cell cycle. Examples of negative regulatory molecules are retinoblastoma protein (Rb), p53, and p21.

Rb, p53, and p21 act primarily at the G1 checkpoint. p53 is a multi-functional protein, it acts when there is damaged DNA during G1. If damaged DNA is detected, p53 halts the cell cycle and recruits enzymes to repair the DNA. If the DNA cannot be repaired, p53 can trigger apoptosis. The protein p53 blocks the activity of Cdks and has been dubbed as ‘Watchman’ or ‘guardian’ because DNA damage is sensed by it.

As p53 levels rise, the production of p21 is triggered. p21 enforces the halt in the cycle by binding to and inhibiting the activity of the Cdk/cyclin complexes. As a result, cell will not move into the S phase.

Rb monitors cell size. In the active, dephosphorylated state, Rb binds transcription factors, E2F. When Rb is bound to E2F, production of proteins necessary for the G1/S transition is blocked. As the cell increases in size, Rb is slowly phosphorylated and becomes inactivated and releases E2F.  E2F can now turn on the gene that produces the transition protein and the G1/S transition block is removed.

For the cell to move past each of the cell cycle checkpoints, all positive regulators must be “turned on” and all negative regulators must be “turned off.”





References

https://bio.libretexts.org/Bookshelves/Cell_and_Molecular_Biology/Book%3A_Cells_-_Molecules_and_Mechanisms_(Wong)/15%3A_Cell_Cycle/15.01%3A_The_Prokaryotic_Cell_Cycle

https://courses.lumenlearning.com/boundless-biology/chapter/control-of-the-cell-cycle/#:~:text=Internal%20Checkpoints%20During%20the%20Cell,assessed%20at%20the%20M%20checkpoint.

https://www.cureffi.org/2013/04/06/cell-biology-08-cell-cycle-regulation-and-checkpoints/

https://www.easybiologyclass.com

 

 

Apoptosis or Programmed Cell Death

 

Apoptosis or Programmed Cell Death

Apoptosis is a process that occurs in multicellular organism when a cell intentionally “decides” to die. This often occurs for the greater good of the whole organism, such as when the cell’s DNA has become damaged and it may become cancerous.

Apoptosis is referred to as “programmed” cell death because it happens due to biochemical instructions in the cell’s DNA; this is opposed to the process of “necrosis,” when a cell dies due to outside trauma or nutrient deprivation.


Like many other complex cellular processes, apoptosis is triggered by signal molecules that tell the cell it’s time to commit cellular “suicide.”


The two major types of apoptosis pathways are “intrinsic pathway,” where a cell receives a signal to destroy itself from one of its own genes or proteins due to detection of DNA damage; and “extrinsic pathway,” where a cell receives a signal to start apoptosis from other cells in the organism. The extrinsic pathway may be triggered when the organism recognizes that a cell has outlived its usefulness or is no longer a good investment for the organism to support.


Apoptosis plays a role in causing and preventing some important medical processes. In humans, apoptosis plays a major role in preventing cancer by causing cells with damaged DNA to commit “suicide” before they can become cancerous. It also plays a role in the atrophy of muscles, where the body decides that it’s no longer a good idea to spend calories on maintaining muscle cells if the cells are not being regularly used.


Apoptosis destroys pre-cancerous cells and cells that are no longer useful to the organism. Because apoptosis can prevent cancer, and because problems with apoptosis can lead to some diseases, apoptosis has been studied intensely by scientists since the 1990s.

Apoptosis is required for Embryogenesis, Metamorphosis, Endocrine dependent tissue atrophy, Normal tissue turnover, Variety of pathologic conditions, etc.

Necrosis Vs Apoptosis

Cells that die as a result of acute injury typically swell and burst. They spill their contents all over their neighbors—a process called cell necrosis—causing a potentially damaging inflammatory response. By contrast, a cell that undergoes apoptosis dies neatly, without damaging its neighbors. The cell shrinks and condenses. The cytoskeleton collapses, the nuclear envelope disassembles, and the nuclear DNA breaks up into fragments. Most importantly, the cell surface is altered, displaying properties that cause the dying cell to be rapidly phagocytosed, either by a neighboring cell or by a macrophage before any leakage of its contents occurs. This not only avoids the damaging consequences of cell necrosis but also allows the organic components of the dead cell to be recycled by the cell that ingests it.

The intracellular machinery responsible for apoptosis depends on a family of proteases that have a cysteine at their active site and cleave their target proteins at specific aspartic acids. They are therefore called caspases (cysteine-aspartic proteases, cysteine aspartases or cysteine-dependent aspartate-directed proteases). 

Apoptopic caspases are subcategorised as:

Initiator Caspases (Caspase 2, Caspase 8, Caspase 9, Caspase 10)

Executioner Caspases (Caspase 3, Caspase 6 and Caspase 7)

Caspases are synthesized in the cell as inactive precursors, or procaspases, which are usually activated by cleavage at aspartic acids by other caspases. Once activated, caspases cleave, and thereby activate, other procaspases, resulting in an amplifying proteolytic cascade.

Initiator caspases auto-proteolytically undergo cleaving and activation.  Executioner caspases are cleaved by initiator caspases. Once initiator caspases are activated, they produce a chain reaction, activating several other executioner caspases. Executioner caspases degrade over 600 cellular components and induce the morphological changes for apoptosis.

For example, some of the activated caspases then cleave other key proteins in the cell. Some cleave the nuclear lamins, for example, causing the irreversible breakdown of the nuclear lamina; another cleaves a protein that normally holds a DNA-degrading enzyme (a DNAse) in an inactive form, freeing the DNAse to cut up the DNA in the cell nucleus. In this way, the cell dismantles itself quickly and neatly, and its corpse is rapidly taken up and digested by another cell.

                                              slideserve.com       oregonstate.edu

 Activation of the intracellular cell death pathway, like entry into a new stage of the cell cycle, is usually triggered in a complete, all-or-none fashion. The protease cascade is not only destructive and self-amplifying but also irreversible, so that once a cell reaches a critical point along the path to destruction, it cannot turn back.

Major cytological changes of apoptosis:

·                  Cell shrinks

·                  Cell fragments

·                  Cytoskeleton collapses

·                  Nuclear envelope disassembles

·                  Cells release apoptotic bodies

·                  The membrane enclosed cell fragments are phagocytosed by macrophages and other cells.

Apoptosis Pathway

There are two major types of apoptosis pathways, extrinsic and intrinsic.

The extrinsic pathway of apoptosis begins outside a cell, when conditions in the extracellular environment determine that a cell must die. The intrinsic pathway of apoptosis pathway happens when injury occurs within the cell and the resulting stress activates the apoptotic pathway.  In both the intrinsic and extrinsic pathway of apoptosis, signaling results in the activation caspases, that act in a proteolytic cascade for apoptosis.


Extrinsic Pathway or death-receptor pathway

This is initiated by the activation of death receptors on the cell surface. Killer lymphocytes for example, can induce apoptosis by producing a protein called Fas ligand, which binds to the death receptor protein Fas on the surface of the target cell. This activates the death domains at the cytoplasmic tail of the receptor. The adaptor protein FADD will recruit pro-Caspase 8 via the DED domain. This FasR, FADD and pro-Caspase 8 form the Death Inducing Signaling Complex (DISC) and Caspase-8 is activated. This either lead to downstream activation of the intrinsic pathway by inducing mitochondrial stress, or lead to direct activation of Executioner Caspases and apoptosis.

Intrinsic Pathway or mitochondrial pathway

Intrinsic stresses such as arising from oncogenes, direct DNA damage, hypoxia, survival factor deprivation, etc can activate the intrinsic apoptotic pathway. p53 is a sensor of cellular stress and is a critical activator of the intrinsic pathway.  p53 initiates apoptosis by the transcriptional activation of pro-apoptotic Bcl2 family members and inhibiting anti-apoptotic Bcl2 proteins.  p53 also activates other genes contributing to apoptosis and genes that lead to increases in Reactive Oxygen Species.  These ROS lead to oxidative damage to mitochondria.

Mitochondria are induced to release the electron carrier protein cytochrome c into the cytosol.  This molecule binds an adaptor protein (APAF-1), which recruits initiator Caspase-9. This leads to the formation of a Caspase activating multiprotein complex called the Apoptosome. Once activated, Caspase 9 will cleave and activate other executioner caspases and leads to degradation of cellular components for apoptosis.

The apoptosome is a large quaternary protein structure formed in the process of apoptosis. It is a multimolecular holoenzyme complex assembled around the adaptor protein Apaf1. Its formation is triggered by the release of cytochrome c from the mitochondria.  The apoptosome triggers the activation of caspases in the intrinsic pathway of apoptosis. Once activated, this initiator caspase can then activate effector caspases and trigger a cascade of events leading to apoptosis.

The external stimuli activate death receptors in extrinsic pathway resulting in the formation of activated caspase 8 which either activate intrinsic pathway by inducing mitochondrial stress or activate executioner caspases for apoptosis.  In intrinsic pathway, the cyctochrome c release results in the activation of caspase 9 which further activates executioner caspases for apoptosis.  Executioner caspases such as caspase 3, 6 and 7 degrade over 600 cellular components and mediates apoptosis. Executioner caspases in apoptosis are termed so because they coordinate the destruction of cellular structures such as DNA fragmentation or degradation of cytoskeletal proteins.

When Does Apoptosis Occur?

Apoptosis occurs when a cell’s existence is no longer useful to the organism. This can occur for a few reasons.

If a cell has become badly stressed or damaged, it may commit apoptosis to prevent itself from becoming dangerous to the organism as a whole. Cells with DNA damage, for example, may become cancerous, so it is better for them to commit apoptosis before that can happen.

Other cellular stresses, such as oxygen deprivation, can also cause a cell to “decide” that it is dangerous or costly to the host. Cells that can’t function properly may initiate apoptosis, just like cells that have experienced DNA damage.

In a third scenario, cells may commit apoptosis because the organism doesn’t need them anymore due to its natural development.

One famous example is that of the tadpole, whose gill, fin, and tail cells commit apoptosis as the tadpole metamorphoses into a frog. These structures are needed when the tadpole lives in water – but become costly and harmful when it moves onto dry land.