Thursday, March 18, 2021

Control of Microorganisms by Physical and Chemical Agents


Microorganisms are ubiquitous.  Although many microorganisms are beneficial and necessary for human well-being, microbial activities may have undesirable consequences, such as food spoilage and disease. Therefore it is essential to be able to kill such microorganisms or inhibit their growth to minimize their destructive effects.  The goal is to destroy pathogens and prevent their transmission, and to reduce or eliminate microorganisms responsible for the contamination of water, food, and other substances.  This is necessary for preventing contamination by microbes in surgery for maintaining asepsis, in food and drug manufacture, etc. 

Control of microorganisms can be achieved by physical or chemical agents.

Sterilization is the process by which all living cells, viable spores, viruses, and viroids are either destroyed or removed from an object or habitat. A sterile object is totally free of viable microorganisms, spores, and other infectious agents. When sterilization is achieved by a chemical agent, the chemical is called a sterilant.

Disinfection is the killing, inhibition, or removal of microorganisms that may cause disease. The primary goal is to destroy potential pathogens, but disinfection also substantially reduces the total microbial population. Disinfectants are agents, usually chemical, used to carry out disinfection and are normally used only on inanimate objects. A disinfectant does not necessarily sterilize an object because viable spores and a few microorganisms may remain.

Sanitization is closely related to disinfection. In sanitization, the microbial population is reduced to levels that are considered safe by public health standards. The inanimate object is usually cleaned as well as partially disinfected. For example, sanitizers are used to clean eating utensils in restaurants.

Antisepsis is the prevention of infection or sepsis and is accomplished on living tissue with chemical agents known as antiseptics. These are chemical agents applied to tissue to prevent infection by killing or inhibiting pathogen growth and they also reduce the total microbial population.

Decontamination is the process of making an article or area free of contaminants including microbial, chemical, radioactive or other hazards.

Substances that kill organisms often have the suffix –cide, a germicide kills pathogens.  A disinfectant or antiseptic can be particularly effective against a specific group, in which case it may be called a bactericide, fungicide, algicide, or viricide.  

Name of Agents that inhibit the growth of microorganisms end in -static and when they are removed, growth will resume.  For example, bacteriostatic and fungistatic.

Conditions Influencing the Effectiveness of Antimicrobial Agent Activity

The efficiency of an antimicrobial agent (an agent that kills microorganisms or inhibits their growth) is affected by at least six factors.

1. Population size. Because an equal fraction of a microbial population is killed during each interval, a larger population requires a longer time to die than a smaller one.

2. Population composition. The effectiveness of an agent varies greatly with the nature of the organisms being treated because microorganisms differ markedly in susceptibility. Bacterial endospores are much more resistant to most antimicrobial agents than are vegetative forms, and younger cells are usually more readily destroyed than mature organisms. Some species are able to withstand adverse conditions better than others.  For example Mycobacterium tuberculosis, which causes tuberculosis, is much more resistant to antimicrobial agents.

3. Concentration or intensity of an antimicrobial agent.Often, the more concentrated a chemical agent or intense a physical agent, the more rapidly microorganisms are destroyed. However, agent effectiveness usually is not directly related toconcentration or intensity.   Sometimes an agent is more effective at lower concentrations. For example, 70% ethanol is more effective than 95% ethanol because its activity is enhanced by the presence of water.

4. Duration of exposure. The longer a population is exposed to a microbicidal agent, the more organisms are killed. To achieve sterilization, exposure duration sufficient to reduce the probability of survival to 10–6 or less should be used.

5. Temperature. An increase in the temperature at which a chemical acts often enhances its activity. Frequently a lower concentration of disinfectant or sterilizing agent can be used at a higher temperature.

6. Local environment. The population to be controlled is surrounded by environmental factors that may either offer protection or aid in its destruction. For example, since heat kills more readily at an acid pH, acid foods and beverages such as fruits and tomatoes are easier to pasteurize than foods with higher pHs like milk. A second important environmental factor is organic matter that can protect microorganisms against heating and chemical disinfectants. For example, the organicmatter in a surface biofilm will protect the biofilm’s microorganisms.

Syringes and medical or dental equipment should be cleaned before sterilization because the presence of too much organic matter could protect pathogens and increase the risk of infection. The same care must be taken when pathogens are destroyed during the preparation of drinking water. When a city’s water supply has a high content of organic material, more chlorine must be added to disinfect it.

The Use of Physical Methods in Control

1.      Sunlight

2.      Drying

3.      Dry heat

4.      Moist heat

5.      Filtration

6.      Radiation

7.      Ultrasonic vibrations

Sunlight- Sunlight possesses bactericidal activity due to ultraviolet rays and heat rays.  Bacteria suspended in water are readily destroyed by exposure to sunlight. 

Drying – Drying destroys bacteria since moisture is essential for the growth of bacteria

Heat – Fire and boiling water has been used for sterilization and disinfection since the ancient times.  Either dry heat or moist heat could be used. Heat is the most reliable method of sterilization. 

Thermal death point (TDP) is the lowest temperature at which a microbial suspension is killed in 10 minutes.

Thermal death time (TDT) is the shortest time needed to kill all organisms in a microbial suspension at a specific temperature and under defined conditions.

The decimal reduction time (D) or D value is the time required to kill 90% of the microorganisms or spores in a sample at a specified temperature. In a semilogarithmic plot of the population remaining versus the time of heating, the D value is the time required for the line to drop by one log cycle or tenfold.


D values are used to estimate the relative resistance of a microorganism to different temperatures through calculation of the z value. The z value is the increase in temperature required to reduce D to 1/10 its value or to reduce it by one log cycle when log D is plotted against temperature.

The F value is the time in minutes at a specific temperature (usually 250°F or 121.1°C) needed to kill a population of cells or spores.

Factors influencing sterilization by heat are

1.      Nature of heat – dry heat or moist heat

2.      Temperature and time

3.      Number of microorganisms present

4.      Characteristics of the organisms

5.      Type of material to be sterilized

Killing effect of drying heat is due to protein denaturation, oxidative damage, and high level of electrolytes. 

Moist heat kills by denaturing and coagulating protein.  Steam liberates latent heat when it condenses on a surface and thereby raises the temperature of that surface.  When steam condense on spore surface, its water content will increase and cause hydrolysis and breakdown of proteins. 

Dry heat

Flaming – inoculating loop or wire, forceps tip, spatula, etc are held in Bunsen burner flame till it is red hot. 

Incineration – contaminated cloth, animal carcasses etc are burned to destroy microorganisms present in it. 

Hot air oven – this is a dry heat sterilization method.  The items to be sterilized are paced in an oven at 160- 180oC for 1-2 hours.  Dry heat takes more time to kill microorganisms than moist heat, but it has certain advantages such as it does not corrode glassware and metal instruments, and can be used to sterilize powders, oils, liquid paraffin, fats, grease, etc.  Dry heat sterilization is slow and is not useful for heat sensitive materials such as plastic and rubber items. 

The hot air oven is usually heated by electricity using heating elements in the wall of chamber.  Oven will be fitted with a fan to ensure even distribution of hot air since hot air is a bad conductor of heat and have low penetrating power.  The materials to be sterilized should be dry and should be arranged in oven such that free circulation of air is ensured.  For sterilization a holding time of 1 hour at 180oC or 2 hour at 160oC is required.  The oven must be allowed to cool down before the door is opened, since otherwise glassware may crack due to sudden or uneven cooling. 

Spores of nontoxigenic strain of Clostridium tetaniare used a microbiological test of dry heat efficiency.  Paper strips impregnated with 106spores are used, and after sterilization the spores are inoculated into appropriate media (thioglycollate or cooked meat media) and incubated to test for growth.

Moist Heat

1.      Temperature below 1000C

2.      Temperature at 1000C

3.      Temperature at atmospheric pressure(1000C)

4.      Temperature under pressure

Temperature below 1000C–

           Pasteurization of milk – Example for this is the Pasteurization of milk.  Milk can be pasteurized in different ways. In the holder method the milk is held at 63°C for 30 minutes.  In flash pasteurization or high-temperature short-term (HTST) pasteurization there is quick heating to about 72°C for 15 seconds, followed by rapid cooling.  Next method is ultrahigh-temperature (UHT) sterilization, where milk is heated at 140 to 150°C for 1 to 3 seconds. By pasteurization all non sporing bacteria such as mycobacteria, brucellae and salmonellae are destroyed.  Coxiella burnetii is heat resistant and may survive holder method.

      Inspissation – media such as Lowenstein Jensen and Loefflers serum are sterilized by using Inspissator.  By heating at 80-850C for 30 minutes on three successive days.

Temperature at 1000C

            Boiling – vegetative bacteria are killed almost immediately at 90-1000C, but sporing bacteria require prolonged periods of boiling.  Hard water should not be used, sterilization may be promoted by the addition of 2% sodium bicarbonate. 

Temperature at atmospheric pressure (1000C) – Free steam is used to sterilize culture media if the media cant withstand high temperature.

            Koch or Arnold Steamer –This is a tinned copper cabinet with conical lid that enables drainage of condensed steam.  Materials to be sterilized is placed in a perforated tray kept above water level so that they are surrounded by steam.  90 minutes exposure is needed for sterilization.

            Tyndallisation or intermittent sterilization – the media is exposed to 1000C for 20 minutes on three successive days.   Here the first exposure kills all vegetative bacteria.  The spores will germinate and will be killed on the subsequent occasions.  This method fail with spores of certain anaerobes and thermophiles. 

Temperature under pressure

Steam sterilization is carried out with an autoclave, a device like a pressure cooker. The development of the autoclave by Chamberland in 1884 stimulated the growth of microbiology. Water is boiled to produce steam, which is released into the autoclave’s chamber. The air initially present in the chamber is forced out until the chamber is filled with saturated steam and the outlets are closed. Hot, saturated steam continues to enter until the chamber reaches the desired temperature and pressure, usually 121°C and 15 pounds of pressure. At this temperature saturated steam destroys all vegetative cells and endospores in a small volume of liquid within 10 to 12 minutes. Treatment is continued for about 15 minutes to ensure sterility.

The chamber should not be packed too tightly because the steam needs to circulate freely and contact everything in the autoclave. Bacterial endospores will be killed only if they are kept at 121°C for 10 to 12 minutes. When a large volume of liquid must be sterilized, an extended sterilization time will be needed because it will take longer for the center of the liquid to reach 121°C.


Moist heat is thought to kill so effectively by degrading nucleic acids and by denaturing enzymes and other essential proteins.  It also may disrupt cell membranes.

For determining the efficiency of moist heat sterilization, spores of Bacillus stearothermophilus or Clostridium PA3679 is used as test organism.  The spores of this organism need an exposure of 12 minutes at 121oC to be killed. 

Low Temperatures

Often the most convenient control technique is to inhibit the growth and reproduction of microbes by the use of either freezing or refrigeration.  This is particularly important in food microbiology. Freezing at -20°C or lower stops microbial growth because of the low temperature and the absence of liquid water. Some microorganisms will be killed by ice crystal disruption of cell membranes, but freezing does not destroy contaminating microbes.

Refrigeration slows microbial growth and reproduction, but does not halt it completely.  Refrigerated items may be ruined by growth of psychrophilic and psychrotrophic microorganisms, particularly if water is present.  Thus refrigeration is a good technique only for shorter-term storage of food and other items.

Filtration

Filtration is an excellent way to reduce the microbial population in solutions of heat-sensitive material, and it can be used to sterilize solutions. Rather than destroying microorganisms, the filter simply removes them.

There are two types of filters.

Depth filters consist of fibrous or granular materials that are bonded into a thick layer with twisting channels of small diameter. The solution containing microorganisms is sucked through this layer under vacuum, and microbial cells are removed by physical screening or entrapment and also by adsorption to the surface of the filter material. Types of Depth filters are

Candle filters are used for water purification (unglazed ceramic filter such as Chamberland and Doulton filter and Diatomaceous earth filter such as Berkefield filters and Mandler filters))

Asbestos filters are disposable single use discs having high absorbing capacity, alakalinise the filtered liquid and are carcinogenic.  Examples are Seitz and Sterimat Filters

Sintered glass filters prepared by heat fusing finely powdered glass particles.  These are of low absoption property, cleaned easily, but are brittle and expensive.

Membrane filters are porous circular membranes, a little over 0.1 mm thick, made of cellulose acetate, cellulose nitrate, polycarbonate, polyvinylidene fluoride, or other synthetic materials.  Although a wide variety of pore sizes are available, membranes with pores about 0.2 m in diameter are used to remove most vegetative cells from solutions. The membranes are held in special holders. The solution is pulled or forced through the filter with a vacuum or with pressure from a syringe or peristaltic pump and collected in previously sterilized containers. Membrane filters remove microorganisms by screening them out much as a sieve separates large sand particles from small ones.  They can’t filter viruses.

These filters are used to sterilize pharmaceuticals, ophthalmic solutions, culture media, oils, antibiotics, and other heat-sensitive solutions.

Air also can be sterilized by filtration. Two common examples are surgical masks and cotton plugs on culture vessels that let air in but keep microorganisms out.

Laminar flow biological safety cabinets are one of the most important air filtration systems.  It employs high-efficiency particulate air (HEPA) filters, which remove 99.97% of 0.3µm particles. Laminar flow biological safety cabinets force air through HEPA filters and pass a vertical curtain of sterile air across the cabinet opening. This protects a worker from microorganisms being handled within the cabinet and prevents contamination of the room. A person uses these cabinets when working with pathogenic microorganisms. They are also employed in research labs and industries for conducting assays, preparing media, examining tissue cultures, etc.

Laminar Flow Cabinets can be produced as both horizontal and vertical cabinets.


Horizontal Laminar Flow Cabinets – Here the direction of air is across the work in a horizontal direction. The constant flow of filtered air provides material and product protection.

Vertical Laminar Flow Cabinets -  Here the laminar air is directed vertically downwards onto the working area. The air can leave the working area via holes in the base. Vertical flow cabinets can provide greater operator protection.

Radiation

There are 2 general types of radiation used for sterilization, ionizing radiation and non-ionizing radiation. Ionizing radiation is the use of short wavelength, high-intensity radiation to destroy microorganisms. This radiation can come in the form of gamma or X-rays that react with DNA and cause cell killing. Non-ionizing radiation uses longer wavelength and lower energy. As a result, non-ionizing radiation loses the ability to penetrate substances, and can only be used for sterilizing surfaces. The most common form of non-ionizing radiation is ultraviolet light.

Ultraviolet (UV) radiation

Ultraviolet lamps are used to sterilize workspaces and tools used in microbiology laboratories and health care facilities. UV light at germicidal wavelengths (two peaks, 185 nm and 265 nm) causes adjacent thymine molecules on DNA to dimerize, thereby inhibiting DNA replication (even though the organism may not be killed outright, it will not be able to reproduce). However, since microorganisms can be shielded from ultraviolet light in fissures, cracks and shaded areas, and it does not penetrate glass, dirt films, water, and other substances very effectively, UV lamps should only be used as a supplement to other sterilization techniques.

UV lamps are sometimes placed on the ceilings of rooms or in biological safety cabinets to sterilize the air and any exposed surfaces. Because UV radiation burns the skin and damages eyes, people working in such areas must be certain the UV lamps are off when the areas are in use. Commercial UV units are available for water treatment. Pathogens and other microorganisms are destroyed when a thin layer of water is passed under the lamps.

Ionizing radiation includes gamma rays, X-rays, and high-speed electron beams. 

This is an excellent sterilizing agent and penetrates deep into objects. It will destroy bacterial endospores and vegetative cells, both procaryotic and eucaryotic; but not effective against viruses. Gamma radiation from a cobalt 60 source is used in the cold sterilization of antibiotics, hormones, sutures, and plastic disposable supplies such as syringes. Gamma radiation has also been used to process meat and other food to eliminate the threat of pathogens as Escherichia coli, Staphylococcus aureus and Campylobacter jejuni. Both the Food and Drug Administration and the World Health Organization have approved food irradiation and declared it safe.

 

Ultrasonic vibrations

Ultrasonic vibrations possess antibacterial activity.  Ultrasonic vibrations (i.e. having frequency greater than 18 kHz) can be used to disrupt cells. The cells are subjected to ultrasonic vibrations by introducing an ultrasonic vibration emitting tip into the cell suspension. The ultrasonic vibration could be emitted continuously or in the form of short pulses. A frequency of 25 kHz is commonly used for cell disruption. The duration of ultrasound needed depends on the cell type, the sample size and the cell concentration. But this is not widely used to achieve sterilization or disinfection. 

 

Chemical agents

Chemicals are often employed in disinfection and antisepsis. Many different chemicals are available for use as disinfectants, and each has its own advantages and disadvantages. Many factors such as the kind of microorganisms present, the concentration and nature of the disinfectant to be used, and the length of treatment, etc influence the treatment. Dirty surfaces must be cleaned before a disinfectant or antiseptic is applied.

An ideal disinfectant must be effective against a wide variety of infectious agents (gram-positive

and gram-negative bacteria, acid-fast bacteria, bacterial endospores, fungi, and viruses) at high dilutions and in the presence of organic matter. Although the chemical must be toxic for infectious agents, it should not be toxic to people or corrosive for common materials. The disinfectant should be stable upon storage, odorless or with a pleasant odor, soluble in water and lipids for penetration into microorganisms, and have a low surface tension so that it can enter cracks in surfaces. If possible the disinfectant should be relatively inexpensive.

Phenolics

Phenol was the first widely used antiseptic and disinfectant. In 1867 Joseph Lister employed it to reduce the risk of infection during operations. Today phenol and phenolics (phenol derivatives) such as cresols, xylenols, and orthophenylphenol are used as disinfectants in laboratories and hospitals. The commercial disinfectant Lysol is made of a mixture of phenolics.

Phenolics act by denaturing proteins and disrupting cell membranes. Phenolics are tuberculocidal, effective in the presence of organic material, and remain active on surfaces long after application. However, they do have a disagreeable odor and can cause skin irritation.

Hexachlorophene has been one of the most popular antiseptics because it persists on the skin once applied and reduces skin bacteria for long periods. However, it can cause brain damage.

Alcohols

Alcohols are among the most widely used disinfectants and antiseptics. They are bactericidal and fungicidal but not sporicidal; some lipid-containing viruses are also destroyed. The two most popular alcohol germicides are ethanol and isopropanol, usually used in about 70 to 80% concentration. They act by denaturing proteins and possibly by dissolving membrane lipids. A 10 to 15 minute soaking is sufficient to disinfect thermometers and small instruments.

Halogens

A halogen is any of the five elements (fluorine, chlorine, bromine, iodine, and astatine) in the periodic table. They exist as diatomic molecules in the free state and form salt like compounds with sodium and most other metals. The halogens iodine and chlorine are important antimicrobial agents.

Iodine is used as a skin antiseptic and kills by oxidizing cell constituents and iodinating cell proteins. At higher concentrations, it may even kill some spores. Iodine often has been applied as tincture of iodine, 2% or more iodine in a water-ethanol solution of potassium iodide. Although it is an effective antiseptic, the skin may be damaged, a stain is left, and iodine allergies can result. More recently iodine has been complexed with an organic carrier to form an iodophor. Iodophors are water soluble, stable, and nonstaining, and release iodine slowly to minimize skin burns and irritation. They are used in hospitals for preoperative skin degerming and in hospitals and laboratories for disinfecting. Some popular brands are Wescodyne for skin and laboratory disinfection and Betadine for wounds.

Chlorine is the usual disinfectant for municipal water supplies and swimming pools and is also employed in the dairy and food industries. It may be applied as chlorine gas, sodium hypochlorite, or calcium hypochlorite, all of which yield hypochlorous acid (HClO) and then atomic oxygen. The result is oxidation of cellular materials and destruction of vegetative bacteria and fungi, although not spores. Death of almost all microorganisms usually occurs within 30 minutes.

Since organic material interferes with chlorine action by reacting with chlorine and its products, an excess of chlorine is added to ensure microbial destruction. Another problem is that chlorine

reacts with organic compounds to form carcinogenic trihalomethanes, which must be monitored in drinking water. Ozone sometimes has been used successfully as an alternative to chlorination

in Europe and Canada.

Chlorine is also an excellent disinfectant for individual use because it is effective, inexpensive, and easy to employ. Small quantities of drinking water can be disinfected with halazone tablets. Halazone (parasulfone dichloramidobenzoic acid) slowly releases chloride when added to water and disinfects it in about a half hour. It is frequently used by campers lacking access to uncontaminated drinking water.

Heavy Metals

For many years the ions of heavy metals such as mercury, silver, arsenic, zinc, and copper were used as germicides. A 1% solution of silver nitrate is often added to the eyes of infants to prevent ophthalmic gonorrhea. Silver sulfadiazine is used on burns. Copper sulfate is an effective algicide in lakes and swimming pools. Heavy metals combine with proteins, often with their sulfhydryl groups, and inactivate them. They may also precipitate cell proteins.

The biocidal effect of metals, especially heavy metals, that occurs even in low concentrations is known as oligodynamic effect (Greek oligos, "few", and dynamis, "force").  

Quaternary Ammonium Compounds

Detergents are organic molecules that serve as wetting agents and emulsifiers because they have both polar hydrophilic and nonpolar hydrophobic ends. Due to their amphipathic nature, detergents solubilize otherwise insoluble residues and are very effective cleansing agents. They are different than soaps, which are derived from fats.

Although anionic detergents have some antimicrobial properties, only cationic detergents are effective disinfectants. The most popular of these disinfectants are quaternary ammonium compounds characterized by a positively charged quaternary nitrogen and a long hydrophobic aliphatic chain. They disrupt microbial membranes and may also denature proteins.

Cationic detergents like benzalkonium chloride and cetylpyridinium chloride kill most bacteria but not M. tuberculosis or endospores.

They do have the advantages of being stable, nontoxic, and bland but they are inactivated by hard water and soap. Cationic detergents are often used as disinfectants for food utensils and small instruments and as skin antiseptics. Several brands are on the market. Zephiran contains benzalkonium chloride and Ceepryn, cetylpyridinium chloride.

Aldehydes

Both of the commonly used aldehydes, formaldehyde and glutaraldehyde, are highly reactive molecules that combine with nucleic acids and proteins and inactivate them, probably by crosslinking and alkylating molecules. They are sporicidal and can be used as chemical sterilants. Formaldehyde is usually dissolved in water or alcohol before use. A 2% buffered solution of glutaraldehyde is an effective disinfectant. It is less irritating than formaldehyde and is used to disinfect hospital and laboratory equipment. Glutaraldehyde usually disinfects objects within about 10 minutes but may require as long as 12 hours to destroy all spores.

Sterilizing Gases

Many heat-sensitive items such as disposable plastic petri dishes and syringes, heart-lung machine components, sutures, and catheters are now sterilized with ethylene oxide gas. Ethylene oxide (EtO) is both microbicidal and sporicidal and kills by combining with cell proteins. It is a particularly effective sterilizing agent because it rapidly penetrates packing materials, even plastic wraps.

Sterilization is carried out in a special ethylene oxide sterilizer, very much resembling an autoclave in appearance, that controls the EtO concentration, temperature, and humidity. Because pure EtO is explosive, it is usually supplied in a 10 to 20% concentration mixed with either CO2 or dichlorodifluoromethane. The ethylene oxide concentration, humidity, and temperature influence the rate of sterilization. A clean object can be sterilized if treated for 5 to 8 hours at 38°C or 3 to 4 hours at 54°C when the relative humidity is maintained at 40 to 50% and the EtO concentration at 700 mg/liter. Extensive aeration of the sterilized materials is necessary to remove residual EtO because it is so toxic.

Betapropiolactone (BPL) is occasionally employed as a sterilizing gas. In the liquid form it has been used to sterilize vaccines and sera. BPL decomposes to an inactive form after several hours and is therefore not as difficult to eliminate as EtO. It also destroys microorganisms more readily than ethylene oxide but does not penetrate materials well and may be carcinogenic. For these reasons, BPL has not been used as extensively as EtO.

Recently vapor-phase hydrogen peroxide has been used to decontaminate biological safety cabinets.

Dyes

Two groups of dyes, aniline dyes and acridine dyes are used as skin and wound antiseptics which are bacteriostatic in action. Aniline dyes in use are malachite green, brilliant green and crystal violet; these are more active against gram positive organisms and are inhibited by organic material.  Their lethal action is due to the reaction with the acid group in the cell. 

Acridine dyes such as proflavine, acriflavine, euflavine and aminacrine are active against gram positive bacteria and are not affected by organic materials. Their action is by impairing DNA replication.